Mauve backbone of 4 Bartonella genomes — mauve

The result of a multiple genome alignment of 4 Bartonella genomes with Mauve

Usage

data(mauve_bbone)

Format

mauve_bbone, a list of two data frame lists, representing the regions which are conserved in at least 2 genomes:

dna_segs: A list of 4 dna_seg objects, containing the mauve blocks for each genome.
comparison: A list of 3 comparison objects.

A bash script to obtain the same file as in the data is available in the extdata folder of the package. Find its location by running system.file('extdata/mauve.sh',package = 'genoPlotR').

The resulting backbone file can then be read with read_mauve_backbone.

References

Mauve: https://darlinglab.org/mauve/mauve.html

Examples

data(mauve_bbone)
plot_gene_map(mauve_bbone$dna_segs, mauve_bbone$comparisons)