Comparison of 4 Bartonella genomes

A comparison of 4 Bartonella genomes by BLAST.

Usage

data(barto)

Format

barto, a list of 3 data frame lists, representing the four genomes and their pairwise comparisons:

dna_segs

A list of 4 dna_seg objects, containing all the protein-coding genes for each genome. Obtained by reading ptt files downloaded from NCBI with read_dna_seg_from_ptt.

comparisons

A list of 3 comparison objects, obtained by doing genome-to-genome (fasta files) BLASTS, and then reading the resulting tab files with read_comparison_from_blast.

rnt_segs

A list of 4 dna_seg objects, containing all the RNA genes of the four genomes. Obtained by reading rnt files downloaded from NCBI with read_dna_seg_from_ptt.

Examples

data(barto)
plot_gene_map(barto$rnt_segs, barto$comparisons, gene_type = "blocks")